Preheat the oven to 350°F.
In a stand mixer bowl, combine the almond flour, coconut sugar, coconut flour, baking soda, and sea salt. Then add the flax egg, ghee, almond butter, and vanilla. Blend on low, the mixture will form a nice cookie batter. Then add the chocolate chips and blend one more until incorporated. This can also be done in a large bowl with a hand mixer.
Line a baking sheet with parchment paper. Using a 2 tablespoon cookie scoop, portion the dough onto a large baking sheet, arranging the balls about 1/2 inch apart. Gently flatten each ball with your fingertips and smooth the edges.
Bake the cookies for 11 minutes. Let cool slightly and transfer each cookie to a rack to cool completely. Store in an airtight container at room temperature, or enjoy one now and freeze the rest for later.